Polar%, Nonpolar%, Charged%, Acidic%, Basic%, GRAVY, pI, Transmembrane, S-S bonds, Domain linker
Secondary structure, Solvent accessibility, Low complexity%, Disorder%, Ubiquitination, N-glycosylation, O-glycosylation, PDB

1. Statistics of Records

Sequence Data [Help]
Species Records
Total 235,121
Plants Data Arabidopsis [Help] 26,326
Soybean [Help] 34,972
Poplar [Help] 35,791
Rice (MSU) [Help] 40,087
Rice (RAP) [Help] 35,908
Moss [Help] 30,654
Algae [Help] 4,595
Comparetive Data Mouse [Help] 20,572
Yeast [Help] 6,216
Unannotated Sequence Data [Help]
Species Records
Total 35,218
Plants Data Arabidopsis [Help] 5,180
Rice (MSU) [Help] 15,322
Rice (RAP) [Help] 14,716
Statistics 1
Table1. Number of Records (All Data)
Arabidopsis Soybean Poplar Rice (MSU) Rice (RAP) Moss Algae Mouse Yeast Total
records (sequences) 26,326 34,972 35,791 40,087 35,908 30,654 4,595 20,572 6,216 235,121
signal (+) [Help] 3,488
(13.2%)
3,250
(9.3%)
3,550
(9.9%)
4,965
(12.4%)
3,920
(10.9%)
2,032
(6.6%)
168
(3.7%)
3,474
(16.9%)
348
(5.6%)
25,195
(10.7%)
solubility (+) [Help] 9,934
(37.7%)
13,215
(37.8%)
14,987
(41.9%)
16,584
(41.4%)
15,354
(42.7%)
14,034
(45.8%)
973
(21.2%)
11,163
(54.3%)
2,597
(41.8%)
98,841
(42.0%)
membrane (+) [Help] 6,451
(24.5%)
8,601
(24.6%)
8,047
(22.5%)
8,646
(21.6%)
7,647
(21.3%)
5,463
(17.8%)
870
(18.9%)
5,993
(29.1%)
1,391
(22.4%)
53,109
(22.6%)
S-S bond (+) [Help] 22,944
(87.2%)
30,902
(88.4%)
30,825
(86.1%)
33,486
(83.5%)
29,612
(82.4%)
25,534
(83.3%)
4,212
(91.7%)
19,046
(92.6%)
5,065
(81.5%)
201,626
(85.7%)
domain linker (+) [Help] 15,985
(60.7%)
21,316
(61%)
20,776
(58.0%)
22,698
(56.6%)
20,709
(57.6%)
14,213
(46.4%)
2,611
(56.8%)
13,179
(64.1%)
3,101
(49.9%)
134,588
(57.2%)
subcellular loc (TargetP) (+) [Help] 12,182
(46.3%)
14,730
(42.1%)
15,499
(43.3%)
20,567
(51.3%)
19,200
(53.4%)
14,404
(47.0%)
2,474
(53.8%)
8,482
(41.2%)
1,792
(28.8%)
109,330
(46.5%)
subcellular loc (WoLF) (+) [Help] 26,326
(100.0%)
34,972
(100.0%)
35,791
(100.0%)
40,087
(100.0%)
35,948
(100.0%)
30,654
(100.0%)
4,595
(100.0%)
6,216
(100.0%)
20,572
(100.0%)
235,161
(100.0%)
ubiquitination site (+) [Help] 11,518
(43.8%)
13,310
(38.1%)
14,020
(39.2%)
12,625
(31.5%)
10,292
(28.6%)
10,784
(35.2%)
1,690
(36.8%)
9,973
(48.5%)
3026
(48.7%)
87,238
(37.1%)
n-glycosylation site (+) [Help] 20,782
(78.9%)
28,223
(80.7%)
27,135
(75.8%)
24,074
(60.1%)
21,037
(58.5%)
20,060
(65.4%)
3,334
(72.6%)
16,081
(78.2%)
5,134
(82.6%)
165,860
(70.5%)
o-glycosylation site (+) [Help] 11,548
(43.9%)
15,707
(44.9%)
14,631
(40.9%)
21,172
(52.8%)
19,277
(53.6%)
13,660
(44.6%)
2,988
(65.0%)
11,644
(56.6%)
2,511
(40.4%)
113,138
(48.1%)
PDB (+) [Help] 9,579
(36.4%)
13,321
(38.1%)
11,470
(32.0%)
10,538
(26.3%)
12,267
(34.1%)
7,834
(25.6%)
1,900
(41.3%)
10,795
(52.5%)
2,314
(37.2%)
80,018
(34.0%)
Pfam (+) [Help] 19,739
(75%)
27,224
(77.8%)
24,125
(67.4%)
15,608
(38.9%)
22,235
(61.9%)
20,338
(66.3%)
3,427
(74.6%)
16,841
(81.9%)
4,412
(71.0%)
153,949
(65.5%)
EC number (+) [Help] 3,888
(14.8%)
5,423
(15.5%)
4,855
(13.6%)
4,080
(10.2%)
4,122
(11.5%)
2,735
(8.9%)
478
(10.4%)
3,379
(16.4%)
1,244
(20.0%)
30,135
(12.8%)
KOG (+) [Help] 13,067
(49.6%)
18,133
(51.9%)
16,329
(45.6%)
14,923
(37.2%)
13,961
(38.8%)
11,073
(36.1%)
2,802
(61.0%)
13,246
(64.4%)
3,650
(58.7%)
107,184
(45.6%)
PASS (+) [Help] 4,250
(16.1%)
7,353
(21%)
6,362
(17.8%)
5,554
(13.9%)
5,499
(15.3%)
2,875
(9.4%)
265
(5.8%)
878
(4.3%)
263
(4.2%)
33,299
(14.2%)
Table2. Rosetta Stone Proteins (All Data)
Arabidopsis Soybean Poplar Rice (MSU) Rice (RAP) Moss Algae Mouse Yeast Total
rosetta-composite [Help] uniprot_plant (+) 3,758 4,302 3,658 3,310 2,695 1,750 154 611 129 20,384
uniprot_sprot (+) 384 887 858 586 483 438 30 1041 87 4,795
this database (+) 2,489 2,966 2,598 1,937 1,709 1,368 110 371 100 13,655
total (+) 5,373 6,503 5,724 4,883 4,067 2,912 257 1747 271 31,760
rosetta-component [Help] uniprot_plant (+) 956 2,745 2,402 3,192 3,462 669 2 134 8 13,572
uniprot_sprot (+) 199 697 621 610 708 164 0 201 7 3,207
this database (+) 738 2,356 2,592 937 1,573 857 49 251 39 9,393
total (+) 1,762 5,132 5,026 4,344 5,117 1,575 51 554 52 23,617
Table3. Average of Records (All Data)
hits length charged% nonpol% acidic% basic% low comp% gravy pI solubility solvent acc% β sheet% disorder% signal% memb (/400aa) S-S bond (/400aa) domain linker (/400aa) ubiquitin (/400aa) n-gly (/400aa) o-gly (/400aa)
Arabidopsis 26,326 402 26.0 52.0 11.8 14.2 8.4 -0.31 7.3 0.27 45.7 13.8 27.1 13.2 0.76 2.86 1.40 1.39 2.60 0.78
Soybean 34,972 398 25.1 52.8 11.1 14.0 7.8 -0.27 7.4 0.27 45.1 13.1 25.2 9.3 0.78 3.01 1.41 1.19 2.83 0.78
Poplar 35,791 369 25.2 52.7 11.2 14.0 7.4 -0.28 7.4 0.30 45.7 13.2 25.9 9.9 0.72 3.01 1.44 1.34 2.83 0.78
Rice (MSU) 40,087 345 25.2 55.9 11.0 14.2 16.2 -0.27 7.7 0.30 45.0 12.6 34.4 12.4 0.70 2.99 1.51 0.97 2.05 1.14
Rice (RAP) 35,948 324 25.0 55.9 10.5 14.5 17.1 -0.25 7.9 0.31 46.1 12.4 34.3 10.9 0.74 2.96 1.61 0.94 2.02 1.26
Moss 30,654 345 24.7 53.7 10.6 14.1 6.9 -0.26 7.6 0.34 46.3 13.4 28.8 6.6 0.62 2.88 1.27 1.27 2.27 1.04
Algae 4,595 494 25.6 54.4 11.1 14.5 7.4 -0.27 7.9 0.15 44.3 12.3 29.4 3.7 0.58 2.74 1.06 0.62 1.48 1.25
Mouse 20,572 488 25.0 53.5 11.1 14.0 9.3 -0.30 7.3 0.41 44.2 12.1 29.9 16.9 0.97 3.53 1.78 1.79 2.19 1.27
Yeast 6,216 441 25.7 50.1 11.5 14.1 7.7 -0.34 7.3 0.30 45.6 12.7 25.8 5.6 0.78 2.02 1.21 1.82 3.72 0.67
Total 235,161 377.6 25.2 53.8 11.0 14.2 10.7 -0.28 7.5 0.31 45.5 12.9 29.4 10.7 0.75 2.99 1.46 1.25 2.43 1.00
Table4. Number of Records (Unannotated Data)
Arabidopsis Rice (MSU) Rice (RAP) Total
records (sequences) 5,180 15,322 14,716 35,218
signal (+) 458
(8.8%)
1,207
(7.9%)
1,119
(7.6%)
2,784
(7.9%)
solubility (+) 2,389
(46.1%)
8,177
(53.4%)
7,746
(52.6%)
18,312
(52.0%)
membrane (+) 1,255
(24.2%)
2,362
(15.4%)
2,624
(17.8%)
6,241
(17.7%)
S-S bond (+) 3,871
(74.7%)
11,104
(72.5%)
10,901
(74.1%)
25,876
(73.5%)
domain linker (+) 2,690
(51.9%)
6,237
(40.7%)
7,066
(48.0%)
15,993
(45.4%)
subcellular loc (TargetP) (+) 2,382
(46%)
7,891
(51.5%)
8,481
(57.6%)
18,754
(53.3%)
subcellular loc (WoLF) (+) 5,180
(100.0%)
15,322
(100.0%)
14,716
(100.0%)
35,218
(100.0%)
ubiquitination (+) 2,382
(46%)
4,239
(27.7%)
3,580
(24.3%)
10,201
(29.0%)
n-glycosylation (+) 3,469
(67%)
6,301
(41.1%)
6,368
(43.3%)
16,138
(45.8%)
0-glycosylation (+) 1,877
(36.2%)
6,462
(42.2%)
7,323
(49.8%)
15,662
(44.5%)
PDB (+) 73
(1.4%)
78
(0.5%)
767
(5.2%)
918
(2.6%)
Pfam (+) 1,647
(31.8%)
1,922
(12.5%)
3,042
(20.7%)
6,611
(18.8%)
EC number (+) 19
(0.4%)
39
(0.3%)
205
(1.4%)
263
(0.7%)
KOG (+) 461
(8.9%)
377
(2.5%)
1,252
(8.5%)
2,090
(5.9%)
PASS (+) 118
(2.3%)
155
(1.0%)
557
(3.8%)
830
(2.4%)
Table5. Rosetta Stone Proteins (Unannotated Data)
Arabidopsis Rice (MSU) Rice (RAP) Total
rosetta-composite uniprot_plant (+) 461 328 433 1,222
this_database (+) 187 77 192 456
uniprot_sprot (+) 1 4 26 31
total (+) 547 383 589 1,519
rosetta-component uniprot_plant (+) 67 269 596 932
this_database (+) 73 45 275 393
uniprot_sprot (+) 1 8 60 69
total (+) 140 311 850 1,301
Table6. Avarage of Records (Unannotated Data)
hits length charged% nonpol% acidic% basic% low comp% gravy pI solubility solvent acc% β sheet% disorder% signal% membrane (/400aa) S-S bond (/400aa) domain linker (/400aa) ubiquitin (/400aa) n-gly (/400aa) o-gly (/400aa)
Arabidopsis 5,180 269.2 27.3 50.1 12.1 15.2 10.7 -0.40 7.8 0.34 50.3 13.4 35.4 8.8 0.75 2.68 1.69 2.35 2.65 0.89
Rice (MSU) 15,322 204.5 26.0 55.3 10.7 15.3 20.5 -0.37 8.4 0.40 47.8 11.8 44.5 7.9 0.58 3.13 1.63 1.26 1.61 1.39
Rice (RAP) 14,716 224.7 25.3 55.6 9.8 15.5 22.8 -0.31 8.6 0.40 49.2 11.5 43.2 7.6 0.70 3.11 1.78 1.16 1.76 1.65
Total 35,218 222.5 25.9 54.7 10.5 15.4 20.0 -0.35 8.4 0.39 48.8 11.9 42.6 7.9 0.66 3.04 1.7 1.41 1.86 1.41

2. Tendency Graphs1 (All Data)

[1] Polar (D/E/H/K/N/Q/R/S/T)
Average of Polar% -All Data
[2] Non-Polar (A/C/F/G/I/L/M/P/V/W/Y)
Average of Non-Polar% -All Data
[3] Charged (D/E/H/K/R)
Average of Charged% -All Data
[4] Acidic (D/E)
Average of Acidic% -All Data
[5] Basic (H/K/R)
Average of Basic% -All Data
[6] GRAVY
Average of GRAVY -All Data
[7] pI
Average of pI -All Data
[8] transmembrane
Average number of tm/400aa (TMHMM) -All Data
[9] S-S bonds
Average number of S-S bonds/400aa (DIpro) -All Data
[10] domain linker
Average number of domain linker/400aa (DROP) -All Data
Sequence data, Number of records, Rosetta stone proteins, Average of records
Polar%, Nonpolar%, Charged%, Acidic%, Basic%, GRAVY, pI, Transmembrane, S-S bonds, Domain linker
Secondary structure, Solvent accessibility, Low complexity%, Disorder%, Ubiquitination, N-glycosylation, O-glycosylation, PDB
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